A Gavryushkina, C Zhang. Total-Evidence Dating and the Fossilized Birth-Death Model. The Molecular Evolutionary Clock, 175-193, 2021

H Biggs, P Parthasarathy, A Gavryushkina, PP Gardner. ncVarDB: a manually curated database for pathogenic non-coding variants and benign controls, Database, 2020

R Bouckaert et al. BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis, PLoS Computational Biology 15(4), e1006650

D Silvestro, RCM Warnock, A Gavryushkina, T Stadler. Closing the gap between palaeontological and neontological speciation and extinction rate estimates, Nature Communications 9:5237, 2018

T Stadler, A Gavryushkina, RCM Warnock, AJ Drummond, TA Heath. The fossilized birth-death model for the analysis of stratigraphic range data under different speciation modes, Journal of Theoretical Biology, 447:41-55, 2018

A Gavryushkina, TA Heath, D Ksepka, T Stadler, D Welch, and AJ Drummond. Bayesian total evidence dating reveals the recent radiation of penguins. Systematic Biology 66 (1): 57-73, doi: 10.1093/sysbio/syw060, 2017.

O Ratmann, A van Sighem, S Jurriaans, A Wensing, D Bezemer, A Gavryushkina, F de Wolf, P Reiss, C Fraser. Sources of HIV infection among men having sex with men and implications for prevention, Science Translational Medicine 8(320): 320ra2-320ra2, 2016.

A Gavryushkina, D Welch, T Stadler, and AJ Drummond. Bayesian inference of sampled ancestor trees for epidemiology and fossil calibration, PLoS Computational Biology 10(12): e1003919, doi:10.1371/journal.pcbi.1003919, 2014.

A Gavryushkina, D Welch, and AJ Drummond. Recursive Algorithms for Phylogenetic Tree Counting, Algorithms for Molecular Biology 8:26, 2013.

A Gavryushkina and A Moskvina. A Generalized Operator Notation and its Properties, Reports of Irkutsk State University, 2012.

A Gavryushkina. The theory of lists and Sigma-definability, Reports of Irkutsk State University, 2011.

AA Gavryushkina. A Scott Rank of Automatic Partial Orderings, NSU Bulletin, 2010.

AA Gavryushkina. On Automatic and Decidable Linear Orderings. Siberian Electronic Mathematical Reports, 2010,

AA Revenko. The Autostability of Ordinals and Low Rank Linear Orders with Respect to Automatic Presentations, NSU Bulletin, 2008.